BiologicalSequenceAnalysis 책 8장. Phylogeny의 확률론적 접근. ||<>|| == Introduction == == Probabilistic models of evolution == == Calculating the likelihood for ungapped alignments == === The case of two sequences === === The likelihood for an arbitrary number of sequences === === Reversibility and independence of root position === == Using the likelihood for inference == === Maximising the likelihood === === Sampling from the posterior distribution === === A proposal distribution for phylogenetic trees === === The bootstrap revisited === == Towards more realistic evolutionary models == === Allowing different rates at different sites === === Evolutionary models with gaps === === Evaluating different probabilistic models === == Comparison of probabilistic and non-probabilistic methods == === A probabilistic interpretation of parsimony === === Maximum likelihood and pairwise distance methods === === A probabilistic interpretation of Sankoff & Cedergren === === Interpreting Hein's algorithm probabilistically ===