Diff for "PsiMap" - BioHackersNet

Differences between revisions 1 and 2

PSIMAP(Protein structural Interactome MAP) is a tool for constructing interactomes. It is a general protocol of mapping proteins and their family interactions.

[http://biocc.ngic.re.kr/PSIMAP/Mediawiki/index.php/Psimap PSIMAP]

PSIMAP algorithms

FAC (Full Atom Contact)
- - caltulates all the atomic contacts among two or more protein structural domians. - Most accurate of the three.
SAC (Sampled Atom Contact)
- - Sample every 3rd or 4th atom. - to reduce the time taken in constructing PSIMAP.
BBC (Bounding Box Contact)
- - using a bounding box algorithm to dramatically reduce the time of computation. - Dafas and Schroeder et al., introduced a bounding box and convex hull alogrithm that can reduce the search space.

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+'''PSIMAP algorithms'''

 * FAC (Full Atom Contact)

   - caltulates all the atomic contacts among two or more protein structural domians.

   - Most accurate of the three.

 * SAC (Sampled Atom Contact)

   - Sample every 3rd or 4th atom.

   - to reduce the time taken in constructing PSIMAP.

 * BBC (Bounding Box Contact)

   - using a bounding box algorithm to dramatically reduce the time of computation.

   - Dafas and Schroeder et al., introduced a bounding box and convex hull alogrithm that can reduce the search space.