BioHackersNet|
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| PSIMAP(Protein structural Interactome MAP) is a tool for constructing interactomes. It is a general protocol of mapping proteins and their family interactions. | PSIMAP(Protein structural Interactome MAP) is a tool for constructing [[Interactome]]s. It is a general protocol of mapping [[Proteins]] and their family [[Interaction]]s. |
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| * [http://biocc.ngic.re.kr/PSIMAP/Mediawiki/index.php/Psimap PSIMAP] | http://biocc.ngic.re.kr/PSIMAP/Mediawiki/index.php/Psimap == PSIMAP algorithms == * FAC (Full Atom Contact) 1. caltulates all the atomic contacts among two or more protein structural domians. 1. Most accurate of the three. * SAC (Sampled Atom Contact) 1. Sample every 3rd or 4th atom. 1. to reduce the time taken in constructing PSIMAP. * BBC (Bounding Box Contact) 1. using a bounding box algorithm to dramatically reduce the time of computation. 1. Dafas and Schroeder et al., introduced a bounding box and convex hull alogrithm that can reduce the search space. ---- 현재는 FAC 방식 밖에 사용하지 않습니다. -- [[neosphere]] <<DateTime(2005-11-24T16:59:41Z)>> |
PSIMAP(Protein structural Interactome MAP) is a tool for constructing Interactomes. It is a general protocol of mapping Proteins and their family Interactions.
http://biocc.ngic.re.kr/PSIMAP/Mediawiki/index.php/Psimap
PSIMAP algorithms
- FAC (Full Atom Contact)
- caltulates all the atomic contacts among two or more protein structural domians.
- Most accurate of the three.
- SAC (Sampled Atom Contact)
- Sample every 3rd or 4th atom.
- to reduce the time taken in constructing PSIMAP.
- BBC (Bounding Box Contact)
- using a bounding box algorithm to dramatically reduce the time of computation.
- Dafas and Schroeder et al., introduced a bounding box and convex hull alogrithm that can reduce the search space.
현재는 FAC 방식 밖에 사용하지 않습니다. -- neosphere 2005-11-25 01:59:41