Diff for "PsiMap" - BioHackersNet

Differences between revisions 2 and 6 (spanning 4 versions)

PSIMAP(Protein structural Interactome MAP) is a tool for constructing Interactomes. It is a general protocol of mapping Proteins and their family Interactions.

http://biocc.ngic.re.kr/PSIMAP/Mediawiki/index.php/Psimap

PSIMAP algorithms

FAC (Full Atom Contact)
1. caltulates all the atomic contacts among two or more protein structural domians.
2. Most accurate of the three.
SAC (Sampled Atom Contact)
1. Sample every 3rd or 4th atom.
2. to reduce the time taken in constructing PSIMAP.
BBC (Bounding Box Contact)
1. using a bounding box algorithm to dramatically reduce the time of computation.
2. Dafas and Schroeder et al., introduced a bounding box and convex hull alogrithm that can reduce the search space.

현재는 FAC 방식 밖에 사용하지 않습니다. -- neosphere 2005-11-25 01:59:41

-  ⇤ ← Revision 2 as of 2005-11-24 15:55:18 → 
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+   ← Revision 6 as of 2012-08-15 09:42:08 → ⇥
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-PSIMAP(Protein structural Interactome MAP) is a tool for constructing interactomes. It is a general protocol of mapping proteins and their family interactions.
+PSIMAP(Protein structural Interactome MAP) is a tool for constructing [[Interactome]]s. It is a general protocol of mapping [[Proteins]] and their family [[Interaction]]s.
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- * [http://biocc.ngic.re.kr/PSIMAP/Mediawiki/index.php/Psimap PSIMAP]
+http://biocc.ngic.re.kr/PSIMAP/Mediawiki/index.php/Psimap
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-'''PSIMAP algorithms'''
+== PSIMAP algorithms ==
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-   - caltulates all the atomic contacts among two or more protein structural domians.

   - Most accurate of the three.
+. caltulates all the atomic contacts among two or more protein structural domians.
  1. Most accurate of the three.
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+Line 12:
-   - Sample every 3rd or 4th atom.

   - to reduce the time taken in constructing PSIMAP.
+. Sample every 3rd or 4th atom.
  1. to reduce the time taken in constructing PSIMAP.
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+Line 16:
+. using a bounding box algorithm to dramatically reduce the time of computation.
  1. Dafas and Schroeder et al., introduced a bounding box and convex hull alogrithm that can reduce the search space.
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+Line 19:
-   - using a bounding box algorithm to dramatically reduce the time of computation.

   - Dafas and Schroeder et al., introduced a bounding box and convex hull alogrithm that can reduce the search space.
+----
현재는 FAC 방식 밖에 사용하지 않습니다. -- [[neosphere]] <<DateTime(2005-11-24T16:59:41Z)>>