PSIMAP(Protein structural Interactome MAP) is a tool for constructing [Interactome]s. It is a general protocol of mapping [Proteins] and their family [Interaction]s.

http://biocc.ngic.re.kr/PSIMAP/Mediawiki/index.php/Psimap

PSIMAP algorithms

  • FAC (Full Atom Contact)
    1. caltulates all the atomic contacts among two or more protein structural domians.
    2. Most accurate of the three.
  • SAC (Sampled Atom Contact)
    1. Sample every 3rd or 4th atom.
    2. to reduce the time taken in constructing PSIMAP.
  • BBC (Bounding Box Contact)
    1. using a bounding box algorithm to dramatically reduce the time of computation.
    2. Dafas and Schroeder et al., introduced a bounding box and convex hull alogrithm that can reduce the search space.

현재는 FAC 방식 밖에 사용하지 않습니다. -- ["neosphere"] DateTime(2005-11-24T16:59:41Z)

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