Method of ParametricSequenceAnalysis

긴 서열에 대해 Windows size와 step size를 정한다. 그 후 step size만큼 이동하면서, windows size내에 있는 서열들의 특이성을 수치화한다. 이 방법으로 할 수 있는 분석방법들

NucleicAcid

Protein

  • Hydrophobisity

Window size

  • if too big, the resulting plot is smoothened.
  • if too small, the resulting plot fluctuates too much.
  • you have to choose a "good" window size somewhere in between these two extremes.

Step size

  • doesn't have as dramatic effect as window size
  • relatively smaller than the size of the signal. otherwise, you can miss the signal by jumping over it.

SlidingWindow (last edited 2013-02-20 14:52:27 by 61)

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